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MEDJED
MEDJED predicts the extent to which a site will undergo microhomology-mediated end joining repair, which can help you select sites for generating high-efficiency gene knockouts.
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GTagHD
GTagHD is used to design ready-to-order, knock-in specific short oligonucleotides for cloning into the universal pGTag vector series for short homology-based gene targeting in zebrafish.
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MENTHU
MENTHU can help you select sites likely to have 1-2 predominant microhomology-mediated end joining repair targets, leading to a more predictable gene knockout.